NOAA Great Lakes Environmental Research Laboratory

The latest news and information about NOAA research in and around the Great Lakes


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The HAB season is over, but the work goes on

It’s nearly winter here in the Great Lakes—our buoys are in the warehouse, our boats are making their way onto dry land, and folks in the lab are working hard to assess observed data, experiments, and other results from this field season.

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This is a retrospective animation showing the predicted surface chlorophyll concentrations estimated by the Experimental Lake Erie HAB Tracker model during the 2018 season. Surface chlorophyll concentrations are an indicator of the likely presence of HABs. For more information about how the HAB Tracker forecast model is produced and can be interpreted, visit our About the HAB Tracker webpage.

The harmful algal bloom (HAB) season is also long over in the region. The final Lake Erie HAB Bulletin was sent out on Oct. 11, as the Microcystis had declined in satellite imagery and toxins decreased to low detection limits in samples. In the seasonal assessment, sent out by NOAA’s Centers for Coastal Ocean Science on Oct. 26, it was determined that the season saw a relatively mild bloom—despite its early arrival in the lake—and the bloom’s severity was significantly less than that which was predicted earlier in the season. These bulletins and outlooks are compiled using several models. Over the winter, the teams working on the models take what they learn from the previous season, and update their models for future use.

Back in the lab, the HABs team—researchers from both GLERL and the Cooperative Institute for Great Lakes Research (CIGLR)—will spend the winter analyzing data they collected through a variety of observing systems. This summer was packed with the use of new observing technologies, like hyperspectral cameras and the Environmental Sample Processor (in case you missed it, check out this fun photo story of the experimental deployment of a 3rd generation ESP). In addition, GLERL and CIGLR staff maintained a weekly sampling program program, from which scientists are analyzing and archiving samples and conducting experiments.

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Aerial photograph of the harmful algal bloom in Western Basin of Lake Erie on July 2, 2018, (Photo Credit: Aerial Associates Photography, Inc. by Zachary Haslick). Pilots from Aerodata have been flying over Lake Erie this summer to map out the general scope of the algal blooms. In addition to these amazing photos, during the flyovers, additional images are taken by a hyperspectral imager (mounted on the back of the aircraft) to improve our understanding of how to map and detect HABs. The lead researcher for this project is Dr. Andrea VanderWoude, a NOAA contractor and remote sensing specialist with Cherokee Nation Businesses. For more images, check out our album on Flickr.

This lab work is super important for understanding the drivers of toxic algae in the Great Lakes. For instance, in a new study released this month, researchers looking at samples from previous years found that “ . . . the initial buildup of blooms can happen at a much higher rate and over a larger spatial extent than would otherwise be possible, due to the broad presence of viable cells in sediments throughout the lake,” according to the lead author Christine Kitchens, a research technician at CIGLR, who works here in the GLERL lab. This type of new information can be incorporated into the models used to make the annual bloom forecasts.

As you can see, our work doesn’t end when the field season is over.  In spring 2019, when the boats and buoys are back in the water and samples are being drawn from the lakes, researchers will already have a jump on their work, having spent the winter months analyzing previous years, preparing, and applying what they’ve learned to the latest version of the Experimental HAB Tracker, advanced observing technologies, and cutting-edge research on harmful algal blooms in the Great Lakes.


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Photo story: Using an AUV to track algae in Lake Erie

In late July and early September, during the peak of the 2018 harmful algal bloom in the Western Basin of Lake Erie, NOAA GLERL, NOAA National Centers for Coastal Ocean Science (NCCOS), NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) and CIGLR researchers teamed up with a group of scientists and engineers from the Monterey Bay Research Institute (MBARI). Their mission: to test how well a third-generation environmental sample processor (3GESP), mounted inside a long-range autonomous underwater vehicle (LRAUV), can track and analyze toxic algae in the Western Basin of Lake Erie. You can read more about the purpose of this project in this great news story by MBARI’s Kim Fulton-Bennett.

Below is a photo story showing all (well, much) of the hard work that went into this test deployment.

First, the new gear had to be shipped from California to the GLERL laboratory in Ann Arbor, Michigan.

 

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Upon arrival, Jim Birch, Director of the MBARI SURF (Sensors Underwater Research of the Future) Center, & Bill Ussler, MBARI biogeochemist, got straight to work in GLERL’s Marine Instrumentation Lab.

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The inside of the 3G ESP has a lot of moving parts. Since this is the first time the team is testing it in freshwater, before it can go out, everything needs to be fine-tuned to work in a variety of conditions in Lake Erie (more on that later.)

So. Many. Moving. Parts.

 

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Once everything is in working order, the 3GESP gets inserted into an LRAUV or long-range autonomous underwater vehicle (the torpedo-looking thing). This gives the 3GESP the ability to move around in the water all by itself once researchers have set parameters for it. The team has named this particular vehicle, Makai, which is Hawaiian for “toward or by the sea.” Seems appropriate! That’s Brian Kieft, MBARI software engineer, on the right. He plays a crucial role in making sure Makai does her job.

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All hands on deck for a few more tweaks.

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Once everything is installed tightly, helium is added into the canister to check for leaks. CIGLR engineer, Russ Miller, is working with Jim to fill it up.

Now, the team is ready to head out to Lake Erie. Here’s where things start to get exciting!

 

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Before the team sets Makai free to track the algal bloom in the Western Basin of Lake Erie, they must first check her ballast and trim. This is especially important for such a shallow lake (relative to where the team has been testing this technology in the deep canyons of of Monterey Bay off the coast of California.)

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Brian has to do all of the hard work.

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Because, science.

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Time to load Makai onto the NOAA vessel, which is stationed in La Salle, Michigan. Captain Kent Baker, a contractor with NOAA, is in the background operating the crane. Kent takes NOAA and CIGLR researchers and technicians out to bi-weekly sampling stations, helps deploy buoys and other instrumentation, and is at the ready for pretty much anything that needs to happen in Lake Erie.

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Once she’s all settled onto the boat, the team takes Makai to the first deployment location.

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The inaugural deployment was set to match up with the bi-weekly sampling stations.

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Look closely and you’ll see Makai off on her way!

Makai and the team spent nearly two weeks tracking, sampling, adjusting, and learning about using this technology to track algal toxins in Lake Erie.

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The team used the images from GLERL’s Experimental Lake Erie Harmful Algal Bloom (HAB) Tracker to determine where to send Makai.

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Then, they would determine how many samples to take, and program her to go to specific waypoints.

Remember when we said this Lake Erie mission will be different than the ones the team has performed in Monterey Bay? Well, here’s one example of how.

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After a few hours of no communication, and a little hunting, this is how the team found Makai. Two problems here: One, with the propellor up and the nose down, Makai cannot transmit data, including her location, as the transmitter only works above water. And, two, well . . .

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The reason she was nose down in the first place is because Lake Erie is pretty shallow, and she’d taken on quite a bit of mud.

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Once she was all cleaned up, the team set Makai out again to complete the rest of her mission.

Once the deployment was over, the research didn’t stop there.

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Archive samples were taken so that folks back in the lab could further analyze them.

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Here’s GLERL’s Observing Systems and Advanced Technology (OSAT) branch chief, Steve Ruberg (left), along with Paul Den Uyl, a researcher with CIGLR, helping Bill extract the sample filters from the cartridges.

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The filters are being collected for analysis of DNA. The DNA will be extracted from each filter and analyzed. We’re looking at absolute quantity of known microcystin producing toxin genes in samples collected, information on bacterial community composition, and information on eukaryotic organism community composition. The samples will also analyzed through shotgun sequencing. This is where all of the genes in the sample are turned into human readable information and can be combined to make what can be thought of as an organism’s genetic instruction guide (what genes it has). This information will be very helpful in better understanding what causes the algae to be toxic (not all algae is toxic).

 


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Photo story: Taking a closer look at how invasive mussels are changing the Great Lakes food web

The invasion of zebra and quagga mussels in the Great Lakes is taking a toll on the ecosystem. To investigate these ecological changes, scientists from GLERL and the Cooperative Institute for Great Lakes Research (CIGLR) are doing experimentation on how quagga mussels affect the lower food web by filtering large amounts of phytoplankton out of the water.  Scientists are also investigating how mussel feeding and excretion of nutrients drive harmful algal blooms (HABs) in growth stimulation, extent, location, and toxicity.

The following experimental activities are being conducted under controlled conditions to look for changes in living and nonliving things in the water before and after quagga mussel feeding.

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Scientists are using quagga mussels captured from Lakes Michigan and Erie to understand how invasive mussels impact the lower food web. Prior to experimentation, the mussels are housed in cages where they graze on phytoplankton in water kept at the same temperature as the lakes. This helps acclimate them to natural lake conditions.

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The research team, led GLERL’s Hank Vanderploeg (front right), coordinates the different phases of the experiment. By filtering water before and after quagga mussel feeding, team members learn about the effect of these mussels on levels of phytoplankton (as measured by chlorophyll), nutrients (phosphorus and nitrogen), particulate matter, carbon, bacteria, and genetic material.

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CIGLR research associates, Glenn Carter and Paul Glyshaw, pour lake water into sample bottles for processing at different stages of the experiment.

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GLERL’s, Joann Cavaletto, pours lake water from the graduated cylinder into the filter funnel. She is filtering for particulate phosphorus samples. She also measures total chlorophyll and fractionated chlorophyll based on 3 size fractions; >20 µm, between 20 µm and 2 µm, and between 2 µm and 0.7 µm.

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GLERL’s Dave Fanslow, operates the FluoroProbe displaying the level of pigments from different phytoplankton throughout the feeding experiment: pre-feeding of quagga mussel, progression of feeding on an hourly basis, and final measurements at the end of the experiment. The FluoroProbe measurements determine the concentration of pigments, such as chlorophyll, that quagga mussels filter out of the water throughout the experiment.

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The FluoroProbe emits highly specific wavelengths of light using an LED array, which then trigger a fluorescence response in algae pigments and allow the immediate classification of green and blue green algae, cryptomonads, and diatoms.

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University of Michigan scientists, Vincent Denef (left and upper right, kneeling in bottom right) and Nikesh Dahal (standing in bottom right), filter water before and after quagga mussel feeding. They are looking at changes in the bacterial community based on the genetic composition of groups, focusing on the variability of toxic production in cyanobacteria in harmful algal blooms. Following the filtration phase of the experiment, they will conduct DNA and RNA sequencing for toxicity gene expression in the cyanobacteria.