NOAA Great Lakes Environmental Research Laboratory

The latest news and information about NOAA research in and around the Great Lakes


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Sounds of the storm and coral reef recovery following Hurricanes Irma and Maria in Puerto Rico

By Dr. Doran Mason (NOAA Great Lakes Environmental Research Laboratory) and Felix Martinez (National Centers for Coastal Ocean Science)

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University of Puerto Rico grad students servicing a hydrophone at the Weinberg site at La Parguera Natural Reserve on the southwest coast of Puerto Rico.  Photo Credit:  Rebecca Becicka, Ph.D. student at University of Puerto Rico, Mayagüez

Researchers at NOAA’s Great Lakes Environmental Research Laboratory (GLERL) are exploring the use of sound to monitor and assess the health of coastal ecosystems, most recently focusing on the soundscape created by Hurricanes Irma and Maria in Puerto Rico. In collaboration with the University of Puerto Rico at Mayagüez, Purdue University (a partner university in the Cooperative Institute for Great Lakes Research consortium), and the National Centers for Coastal Science (NCCOS), GLERL has launched a pilot study on developing the long-term use of soundscape. To implement this new approach to monitoring, hydrophones, an instrument in measuring sound, are used to track the response of ecosystems to natural (e.g., tropical storms) and human-induced (e.g., stressors such as excess nutrients, sedimentation, fishing pressure, climate change) disturbances.

In this pilot project, hydrophones have been in place for six months at three sites (see below for Google Earth Map of Magueyes Island, La Parguera, Puerto Rico) at La Parguera Natural Reserve on the southwest coast of Puerto Rico prior to and during the two category 4 hurricanes that pummeled the island. Miraculously, the recorders and data survived the storms and were recovered, providing us with a unique opportunity to listen to the hurricanes and to evaluate how quickly reefs recover from a natural disaster.  

What is a soundscape?  Soundscapes are created by the aggregation of sounds produced by living organisms (invertebrates, fish, marine mammals), non-biological natural sounds (waves, rain, movement of the earth), and sounds produced by humans (boats, coastal roads). Changes in the biological portion of soundscape can provide us with the quantitative data to assess the health of the ecosystem in response to natural and human-induced disturbance.  Thus, our overall goal is to develop quantitative indices of coastal ecosystem health, based on the soundscape to assess the state of the environment, and to understand and predict changes, with application towards ecosystem restoration and conservation efforts. The utility of this approach is the use of a low-cost, remote autonomous technology that holds potential in expanding NOAA’s long-term observational capacity to monitor and assess coastal habitats.

Why GLERL?  As part of a long history of monitoring and research in the Great Lakes, GLERL scientists have cultivated a unique expertise in the development of autonomous remote sensing technology. In the last two decades, Purdue University (a CIGLR partner) has been one of the leaders in the development of terrestrial soundscapes as a critical tool to monitor ecosystem change. More recently, interest has grown in expanding this approach into the aquatic realm.  Building on our relationship with Purdue, GLERL and partners are well positioned to advance use of soundscape ecology to meet NOAA’s mission to protect, restore, and manage the use of coastal and ocean resources. In addition to the pilot study, GLERL is partnering with NCCOS to reach out to other NOAA Line Office programs in efforts to formalize the use of soundscapes within NOAA as a scientific program.  For example, efforts are underway to plan an international workshop to establish the foundational principles and identify research and technology gaps for the use of soundscape ecology.

Why Puerto Rico? Original support for this pilot study came from a congressional allocation for enhancing relationships with the cooperative institutes for the benefit of coral reef restoration and conservation. Given the scientific knowledge accrued from NCCOS’ prior investments in La Parguera, GLERL and its NCCOS partner recognized that Puerto Rico would be a prime location to test and develop the use of soundscapes technology to track and quantify the health of coastal ecosystems.

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Google Earth Map of Magueyes Island, La Parguera, Puerto Rico showing coral reef locations where the hydrophones were deployed at different depths: Weinberg (shelf-edge) – 75′; Media Luna (mid-shelf) – 45′; Pelotas (inner-shelf) – 35′.  Provided by: Prof. Richard Appeldoorn, University of Puerto Rico, Mayagüez

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Colleagues from Purdue University and University of Puerto Rico deploy Media Luna reef site hydrophone for the first time.  Photo credit: Steve Ruberg, NOAA GLERL

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View of La Parguera from Media Luna reef site. Photo credit: Steve Ruberg, NOAA GLERL


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New algorithm to map Great Lakes ice cover

Leshkvich sampling ice

GLERL researcher, George Leshkevich, drilling through the ice in Green Bay, Lake Michigan.

NOAA’s Great Lakes Environmental Research Laboratory (GLERL) is on the cutting edge of using satellite remote sensing to monitor different types of ice as well as the ice cover extent. To make this possible, an algorithm—a mathematical calculation developed at GLERL to retrieve major Great Lakes ice types from satellite synthetic aperture radar (SAR) data—has been transferred to NOAA’s National Environmental Satellite, Data, and Information Service (NESDIS) for evaluation for operational implementation.

Once operational, the algorithm for Great Lakes ice cover mapping holds multiple applications that will advance marine resource management, lake fisheries and ecosystem studies, Great Lakes climatology, and ice cover information distribution (winter navigation).  Anticipated users of the ice mapping results include the U.S. Coast Guard (USCG), U.S. National Ice Center (NIC), and the National Weather Service (NWS).

For satellite retrieval of key parameters (translation of satellite imagery into information on ice types and extent), it is necessary to develop algorithms specific to the Great Lakes owing to several factors:

  • Ocean algorithms often do not work well in time or space on the Great Lakes
  • Ocean algorithms often are not tuned to the parameters needed by Great Lakes stakeholders (e.g. ice types)
  • Vast difference exists in resolution and spatial coverage needs
  • Physical properties of freshwater differ from those of saltwater

The relatively high spatial and temporal resolution (level of detail) of SAR measurements, with its all-weather, day/night sensing capabilities, make it well-suited to map and monitor Great Lakes ice cover for operational activities. Using GLERL and Jet Propulsion Lab’s (JPL) measured library of calibrated polarimetric C-band SAR ice backscatter signatures, an algorithm was developed to classify and map major Great Lakes ice types using satellite C-band SAR data (see graphic below, Methodology for Great Lakes Ice Classification prototype).

ICECON (ice condition index) for the Great Lakes—a risk assessment tool recently developed for the Coast Guard—incorporates several physical factors including temperature, wind speed and direction, currents, ice type, ice thickness, and snow to determine 6 categories of ice severity for icebreaking operations and ship transit.  To support the ICECON ice severity index, the SAR ice type classification algorithm was modified to output ice types or groups of ice types, such as brash ice and pancake ice to adhere to and visualize the U.S. Coast Guards 6 ICECON categories. Ranges of ice thickness were assigned to each ice type category based on published freshwater ice nomenclature and extensive field data collection. GLERL plans to perform a demonstration/evaluation of the ICECON tool for the Coast Guard this winter.

Mapping and monitoring Great Lakes ice cover advances NOAA’s goals for a Weather-Ready Nation and Resilient Coastal Communities and Economies, and Safe Navigation. Results from this project, conducted in collaboration with Son V. Nghiem (NASA/Jet Propulsion Laboratory), will be made available to the user community via the NOAA Great Lakes CoastWatch website (https://coastwatch.glerl.noaa.gov).

 

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ICECON Scale

Measuring different ice types on Green Bay used to validate the ICECON (ice type classification) Scale in a RADARSAT-2 synthetic aperture radar (SAR) scene taken on February 26, 2017.

 


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Embracing Collaboration and Partnerships: A Way of Life at GLERL

The science community in the Great Lakes region holds a long history of partnership building, extending across jurisdictional, institutional, and disciplinary lines. These partnerships have been evolving in the region for decades as a means to leverage the intellectual capital and financial resources needed to address the environmental challenges (sediment and nutrient loading, toxic pollution, invasive species) threatening the integrity of the Great Lakes.  Agreements and programs established in the region—such as the Great Lakes Water Quality (1972), Great Lakes Regional Collaboration (2005), and Great Lakes Restoration Initiative (2010)—are celebrated for their unique partnerships of federal, state/provincial, and tribal and local governments.

GLERL has embraced the Great Lakes tradition of collaboration and partnership building in the development and implementation of its scientific research program since the laboratory’s inception in the mid-1970s.  As a primary organizational goal, GLERL envisions partnerships as a way to strengthen capacity in the conduct of its interdisciplinary research. One way that we accomplish this is by providing a hub for collaboration at GLERL’s Ann Arbor facility—such as space for meetings and workshops to help in the coordination of scientific research and policy—as well as at GLERL’s Lake Michigan Field Station in Muskegon where vessels and laboratory space are made available to support scientific investigations.

Also notable is GLERL’s historical partnership with the NOAA Cooperative Institutes (CIs). The CIs are academic research institutes, frequently co-located within NOAA research laboratories, to create a strong, long-term collaboration among government scientists in the laboratories and the associated academic institutions. Currently, there is great excitement at GLERL for the newly established Cooperative Institute for Great Lakes Research (CIGLR), formerly known as the Cooperative Institute for Limnology and Ecosystems Research. CIGLR, hosted by the University of Michigan’s School of Environment and Sustainability (SEAS), collaborates with nine university partners as part of the institute’s Regional Consortium. This collaborative arrangement expands the research capacity, intellectual expertise, and geographic reach of CIGLR and all its partners, while increasing GLERL’s ability to fulfill NOAA’s mission in the Great Lakes.

In keeping with the Great Lakes tradition of collaboration and partnership building, we are pleased to announce the creation GLERL’s new webpage, Collaborating with GLERL. Provided on the webpage is specific guidance on how to pursue collaboration and partnerships with GLERL in areas such as research partnerships, data access, event hosting, vessel operations, as well as internships and fellowships. Through this webpage, we hope to enable our partners to benefit from the valuable resources offered by NOAA GLERL.  We invite you to browse this webpage so you are fully aware of the opportunities that GLERL offers to help keep the Great Lakes great.

Visit the new webpage at https://www.glerl.noaa.gov/about/collaborating.html.


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Update on Lake Erie hypoxia forecasting stakeholder workshop (May 23, 2017)

Researchers partner with drinking water plant managers to forecast hypoxia in Lake Erie

By Devin Gill, Cooperative Institute for Great Lakes Research and Kristin Schrader, Great Lakes Observation Systems

Lake Erie’s “dead zone” not only impacts the lake’s ecosystem, but also poses challenges for managers of drinking water treatment facilities. The Lake Erie dead zone is a region of the central basin where oxygen levels within the water become extremely low, creating a condition known as hypoxia. Great Lakes researchers are sharing their scientific expertise to help managers be fully prepared for threats to drinking water resulting from hypoxic conditions.

Scientists from NOAA GLERL, Cooperative Institute for Great Lakes Research (CIGLR) and the Great Lakes Observing System (GLOS) met on May 23 in Cleveland, Ohio with water plant managers from the southern shore of Lake Erie for a stakeholder engagement workshop to discuss the hypoxia issue. An important focus of the workshop was the development of a new hypoxia forecast model that will act as an early warning system when hypoxic water has the potential to enter intakes of water treatment facilities. The depletion of oxygen in hypoxic water occurs when the water column stratifies (separates into warm and cold layers that don’t mix). Oxygen in the lower, cold layer becomes depleted from the lack of mixing with the upper (warm) layer that is exposed to air, as well as from the decomposition of organic matter (dead plants and animals) in the lower layer. The process of hypoxia is illustrated by GLERL’s infographic, The Story of Hypoxia.

Stakeholders who attended the workshop explained that water treatment operators must be prepared to respond quickly during a hypoxic event to ensure that drinking water quality standards are met. Hypoxic water often is associated with low pH and elevated manganese and iron. Manganese can cause discoloration of treated water, while low pH may require adjustment to avoid corrosion of water distribution pipes, which can introduce lead and copper into the water.

At the workshop, researchers shared information on lake processes that contribute to hypoxia and on development of the Lake Erie Operational Forecasting System that provides nowcasts and forecasting guidance of water levels, currents, and water temperature out to 120 hours, and is updated 4 times a day. Information was also shared on preliminary hypoxia modeling results that simulated an upwelling event (wind-driven motion in the Great Lakes, pushing cooler water towards the lake surface, replacing the warmer surface water) that brought hypoxic water to several water plant intakes in September, 2016. Water plant managers reported that advance notice of a potential upwelling event that could bring hypoxic water to their intakes would be useful to alert staff and potentially increase the frequency of testing for manganese.

Dr. Mark Rowe from University of Michigan, CIGLR, researcher and co-lead on this initiative, comments on the value of this hypoxia stakeholder engagement workshop: “At both NOAA and the University of Michigan, there is an increasing focus on co-design of research, which refers to involving the end-users of research results throughout the entire project, from concept to conclusion. If we succeed, a new forecast model will be developed that will be run by the operational branch of NOAA. This can only happen if there is a group of users who request it. This workshop provided critical information to the researchers regarding the needs of the water plants, while also informing water plant managers on how forecast models could potentially help them plan their operations, and on the latest scientific understanding of hypoxia in Lake Erie. ”

Stakeholder Scott Moegling, Water Quality Manager at City of Cleveland Division of Water, also recognizes the value of  engagement between the stakeholders and the Great Lakes researchers. Moegling points out that “the drinking water plant managers not only benefit from sharing of operational information and research, but also by establishing lines of communication between water utilities and researchers that help identify common areas of interest. The end result—researchers providing products that can be immediately used by water utilities—is of obvious interest to the water treatment industry on Lake Erie.”  Moegling also views the GLERL/CIGLR research on the hypoxia forecast model as holding great potential in predicting hypoxic conditions in Lake Erie and believes that once the model is developed and calibrated, there may be a number of other possibilities for highly useful applications.

In addition to sharing the latest research on hypoxia, the stakeholder engagement workshop provided a forum for water plant managers to share information with each other on how to recognize hypoxic events and efficiently adjust water treatment processes. Researchers at CIGLR and NOAA GLERL are committed to conduct research that serves society, and will continue to work with this stakeholder group over the course of the five-year project to develop a hypoxia forecast model that meets their needs.

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NOAA GLERL collaborating with partners to monitor the Lake Huron ecosystem

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The NOAA Great Lakes Environmental Research Laboratory (GLERL) is participating in an international, multi-agency effort to study invasive species, water quality, fisheries, and climate change in Lake Huron this field season—pursuing key knowledge gaps in the ecosystem. The Coordinated Science and Monitoring Initiative (CSMI) coordinates across U.S. and Canadian agencies to conduct intensive sampling in one Great Lake per year, on a five-year cycle. The Great Lakes Restoration Initiative, which is administered by the U.S Environmental Protection Agency (EPA), is funding this research.

“While GLERL has had a long-term research program focused on Lake Michigan, we are using this initiative to advance long-term research on Lake Huron,” said GLERL Director Deborah Lee. “Invasive species, warming temperatures, and changes in nutrient loading are putting as much stress on Lake Huron as on Lake Michigan. We want to better understand the Lake Huron ecosystem and develop modeling tools to predict how the lake is changing.”

Henry Vanderploeg, Ph.D., chief of GLERL’s Ecosystem Dynamics research branch and lead researcher for GLERL’s efforts in the pelagic (open water) portion of the initiative comments, “GLERL plays a critical role in the CSMI, addressing key science questions. GLERL’s high frequency temporal and spatial sampling will help determine nutrient and energy flows from tributaries, nearshore to offshore. This type of data is critical to effectively manage Lake Huron for water quality and fish production.” Frequent spatial surveys are key to understanding food web connections throughout the seasons.

Researchers from GLERL  will expand upon their recent work in Lake Michigan (CSMI 2015) and past work in Huron (2012) to determine fine-scale food-web structure and function from phytoplankton to fishes along a nutrient-rich transect (from inner Saginaw Bay out to the 65-m deep Bay City Basin) and along a nutrient-poor transect (from inner Thunder Bay out to the Thunder Bay basin) during May, July, and September. GLERL will collect additional samples of fish larvae and zooplankton along both transects in June to help estimate larvae growth, diet, density, and mortality and to identify fish recruitment bottlenecks.

“GLERL was instrumental in establishing the long-term monitoring efforts that provide the foundation for current CSMI food-web studies,” said Ashley Elgin, Ph.D., research ecologist in the Ecosystem Dynamics research branch. Elgin serves as the NOAA representative on the CSMI Task Team, part of the Great Lakes Water Quality Act Annex 10, alongside partners from the U.S. Geological Survey (USGS), EPA, the U.S. Fish & Wildlife Service, Environment and Climate Change Canada, and the Ontario Ministries of Natural Resources and the Environment and Climate Change. This year, Elgin is conducting critical mussel growth field experiments in Lake Huron, expanding upon work she developed in Lake Michigan.  She will be addressing the following questions: (1) How does quagga mussel growth differ between regions with different nutrient inputs?; and (2) How do growth rates compare between Lakes Michigan and Huron? Elgin will also coordinate a whole-lake benthic survey, which will update the status of dreissenid mussels and other benthic-dwelling organisms in Lake Huron.  

GLERL’s key research partner, the Cooperative Institute for Great Lakes Research (CIGLR), will deploy a Slocum glider for a total of sixteen weeks to collect autonomous measurements of temperature, chlorophyll, colored dissolved organic matter (CDOM), and photosynthetically active radiation (PAR) between outer Saginaw Bay and open waters of the main basin.  Deployment times and coverage will be coordinated with other glider deployments by the EPA Office of Research and Development (ORD) and/or USGS Great Lakes Science Center, spatial research cruises, and periods of expected higher nutrient loads (i.e., following runoff events).  

CSMI research cruises began in late April and will continue through September. Researchers are using an impressive fleet of research vessels, including EPA’s 180-foot R/V Lake Guardian, GLERL’s 80-foot R/V Laurentian and 50-foot R/V Storm, and two large USGS research vessels, the R/V Articus and R/V Sterling. Sampling missions will also be conducted aboard Environment Canada’s Limnos across Lake Huron. The Laurentian is fitted out with a variety of advanced sensors and sampling gear, making it especially suitable for examining fine-scale spatial structure.

Scientists from the USGS Great Lakes Science Center, the Michigan Department of Natural Resources, and the University of Michigan are also participating in the Lake Huron CSMI.


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“Just Because the Blooms in Lake Erie Slow Down, Doesn’t Mean We Do”

NOAA GLERL harmful algal blooms research program featured on Detroit Public Television

As part of a series on The Blue Economy of the Great Lakes, NOAA’s Great Lakes Environmental Research Laboratory (GLERL) is featured in a short video, produced by Detroit Public Television (DPTV) and published on the DPTV website. The video, which features GLERL and its partners from the Cooperative Institute for Great Lakes Research (CIGLR, known formerly as CILER), describes the advanced technology GLERL uses to monitor, track, predict, and understand harmful algal blooms (HABs) in the Great Lakes. More specifically, the video focuses on efforts in Lake Erie, where over 400,000 people were affected by a 3-day shutdown of the Toledo drinking water treatment facility in 2014. Since then, GLERL and CIGLR have enhanced their HABs research program—much of which is made possible by funding from the Great Lakes Restoration Initiative, or GLRI—to include cutting-edge technologies such as the hyperspectral sensors and an Environmental Sample Processor (ESP), as well as experimental forecasting tools like the Lake Erie HAB Tracker.

In addition to online coverage, the video will be broadcast via DPTV at a future time, yet to be determined.

View the video above, or visit http://bit.ly/2pK2g0J.


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Lake Erie Hypoxia Forecasting Project Kicks Off With Stakeholder Workshop

A collaborative research team, led by Drs. Craig Stow of the National Oceanic and Atmospheric Administration’s Great Lakes Environmental Research Laboratory (NOAA GLERL) and Mark Rowe of the University of Michigan’s Cooperative Institute for Limnology and Ecosystems Research (CILER),  will be holding a workshop with key stakeholders for guidance on how a forecast model could help meet the needs for information on low oxygen conditions—or hypoxia—in Lake Erie. The workshop, coming up later this spring, kicks off a 5-year project that brings together inter-agency and university scientists to produce a forecasting system that will predict the location and movement of hypoxic water in Lake Erie. The project will link a hypoxia model to NOAA’s Lake Erie Operational Forecasting System (LEOFS) hydrodynamic model, which provides daily nowcast and 5-10 day forecasts of temperature and currents in Lake Erie.

HypoxiaDiagram

Hypoxia occurs in the central basin of Lake Erie in July through September of most years. Low-oxygen water is an unfavorable habitat for fish, and may kill benthic organisms that provide food for fish. It is less well known, however, that hypoxic water can also upset drinking water treatment processes. Upwelling or seiche events can bring hypoxic water to water intakes along the shoreline, causing rapid changes in dissolved oxygen and associated water quality variables such as temperature, pH, dissolved organic matter, iron, and manganese. To maintain the quality of treated water, plant managers must adjust treatment in response to these changes. Hypoxia forecasts will provide several days advance notice of changing source water quality so that drinking water plant managers can be prepared to adjust treatment processes as needed.

While the hypoxia forecasting project will help to minimize the negative impacts of hypoxia, a parallel effort is occurring to address the root cause of this problem involving nutrient loading. Universities, state, federal, and Canadian agencies are collaborating to satisfy the goals of the Great Lakes Water Quality Agreement by reducing nutrient loads to Lake Erie, a primary stressor driving hypoxic conditions.

The upcoming stakeholder workshop on hypoxia will bring the research team together with stakeholders consisting of municipal drinking water plant managers from U.S. and Canadian facilities on Lake Erie, as well as representatives of state and local agencies. The group will learn about hypoxia and its effects, hear about the goals of the LEOFS-Hypoxia project, and provide input to the research team on their information needs. As the first in a series of meetings of the project’s Management Transition Advisory Group, this workshop will help identify the most useful data types and delivery mechanisms, laying the groundwork for the research team to design a forecasting tool that specifically addresses the needs of public water systems on Lake Erie.

The workshop will be held at Cleveland Water in Cleveland, Ohio. Representatives from Ohio Environmental Protection Agency (EPA), Ohio Department of Natural Resources, Ohio Sea Grant, townships and other local governments were also invited to attend.  

The LEOFS-Hypoxia project is a collaboration with the City of Cleveland Division of Water, Purdue University, and U. S. Geological Survey, with guidance from a management advisory group including representatives from Ohio public water systems, Ohio EPA, Great Lakes Observing System (GLOS), and NOAA. The work is supported by a $1.4 million award from the NOAA National Centers for Coastal Ocean Science (NCCOS) Center for Sponsored Coastal Ocean Research by a grant to NOAA GLERL and University of Michigan (award NA16NOS4780209).

Getting to the root cause of the problem
As part of an initiative conducted under the auspices of the Great Lakes Water Quality Agreement, Annex 4, the following forums, led by Dr. Craig Stow at GLERL, will focus on the linkage of nutrient loading to water quality degradation problems, such as hypoxia and harmful algal blooms.

  • 4/5-6: Nutrient Load Workshop
  • 5/9-10: Annex 4 (nutrients) Subcommittee Meeting

Scientists attending these workshops will apply long term research results to estimate nutrient inputs to Great Lakes waters and evaluate how well we are doing in reaching phosphorus load reduction targets established under Annex 4 of the GLWQA.

Additional Resources
NOAA GLERL Hypoxia web page: https://www.glerl.noaa.gov/res/HABs_and_Hypoxia/hypoxiaWarningSystem.html

Download the NOAA GLERL hypoxia infographic, here: