NOAA Great Lakes Environmental Research Laboratory

The latest news and information about NOAA research in and around the Great Lakes


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A message from the Director: Great Lakes research highlighted at the 2018 World Environmental and Water Resources Congress

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(Left to right) Cristiane Surbeck, PE, D.WRE,  EWRI President (2018), Associate Professor, Department of Civil Engineering, University of Mississippi; Sridhar Kamojjala, PE, D.WRE, EWRI 2018 Conference Chair, Las Vegas Valley Water District; Deborah H. Lee, PE, D.WRE, Past President American Academy of Water Resources Engineers, NOAA GLERL Director

By Deborah H. Lee, Director, NOAA Great Lakes Environmental Research Laboratory

Recently, I had the opportunity to bring NOAA in the Great Lakes to the 2018 World Environmental and Water Resources Congress. The conference, held in Minneapolis the first week of June, brought together of several hundred civil engineers and members of the Environmental Water Resources Institute (EWRI). The Institute is the largest of the American Society of Civil Engineers’ 9 technical institutes, with about 20,000 members serving as the world’s premier community of practice for environmental and water-related issues.

As the invited keynote luncheon speaker, I presented, “Keeping the Great Lakes Great: Using Stewardship and Science to Accelerate Restoration.” In keeping with this year’s theme of “Protecting and Securing Water and the Environment for Future Generations,” my focus was NOAA’s science and restoration success stories, highlighting the many accomplishments of the Great Lakes Restoration Initiative.

I took the audience on a virtual tour of NOAA’s most exciting and innovative projects. Among those discussed were Areas of Concern, preventing and controlling invasive species, reducing nutrient runoff that contributes to harmful/ nuisance algal blooms, restoring habitat to protect native species, and generating ground-breaking science. 

I purposefully took a multimedia approach in reaching out to the EWRI community, recognizing that not all may be familiar with the Great Lakes and NOAA’s role in the region. To keep the audience engaged and entertained, several short videos were integrated throughout my talk, including the Telly award-winning “NOAA in the Great Lakes” and the short animation “How Great are the Great Lakes?” Three video clips on Great Lakes Restoration Initiative projects that highlighted the positive environmental and economic impacts of NOAA’s work were also incorporated.

Overall, I see my participation in this high profile conference as a great opportunity to raise awareness on the Great Lakes and NOAA’s mission, and was very pleased with the interest and enthusiastic response to my presentation. In looking ahead, I will be serving as EWRI’s next vice-president beginning this October and then sequentially as president-elect, president and past president in the following years. I look forward to continuing to work as steward for Great Lakes issues and advancing NOAA’s work in the region.


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Photo story: Taking a closer look at how invasive mussels are changing the Great Lakes food web

The invasion of zebra and quagga mussels in the Great Lakes is taking a toll on the ecosystem. To investigate these ecological changes, scientists from GLERL and the Cooperative Institute for Great Lakes Research (CIGLR) are doing experimentation on how quagga mussels affect the lower food web by filtering large amounts of phytoplankton out of the water.  Scientists are also investigating how mussel feeding and excretion of nutrients drive harmful algal blooms (HABs) in growth stimulation, extent, location, and toxicity.

The following experimental activities are being conducted under controlled conditions to look for changes in living and nonliving things in the water before and after quagga mussel feeding.

photo of small quagga mussels

Scientists are using quagga mussels captured from Lakes Michigan and Erie to understand how invasive mussels impact the lower food web. Prior to experimentation, the mussels are housed in cages where they graze on phytoplankton in water kept at the same temperature as the lakes. This helps acclimate them to natural lake conditions.

male and female scientists doing research at lab tables

The research team, led GLERL’s Hank Vanderploeg (front right), coordinates the different phases of the experiment. By filtering water before and after quagga mussel feeding, team members learn about the effect of these mussels on levels of phytoplankton (as measured by chlorophyll), nutrients (phosphorus and nitrogen), particulate matter, carbon, bacteria, and genetic material.

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CIGLR research associates, Glenn Carter and Paul Glyshaw, pour lake water into sample bottles for processing at different stages of the experiment.

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GLERL’s, Joann Cavaletto, pours lake water from the graduated cylinder into the filter funnel. She is filtering for particulate phosphorus samples. She also measures total chlorophyll and fractionated chlorophyll based on 3 size fractions; >20 µm, between 20 µm and 2 µm, and between 2 µm and 0.7 µm.

male researcher using instrument next to computer screen

GLERL’s Dave Fanslow, operates the FluoroProbe displaying the level of pigments from different phytoplankton throughout the feeding experiment: pre-feeding of quagga mussel, progression of feeding on an hourly basis, and final measurements at the end of the experiment. The FluoroProbe measurements determine the concentration of pigments, such as chlorophyll, that quagga mussels filter out of the water throughout the experiment.

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The FluoroProbe emits highly specific wavelengths of light using an LED array, which then trigger a fluorescence response in algae pigments and allow the immediate classification of green and blue green algae, cryptomonads, and diatoms.

male scientists filtering water

University of Michigan scientists, Vincent Denef (left and upper right, kneeling in bottom right) and Nikesh Dahal (standing in bottom right), filter water before and after quagga mussel feeding. They are looking at changes in the bacterial community based on the genetic composition of groups, focusing on the variability of toxic production in cyanobacteria in harmful algal blooms. Following the filtration phase of the experiment, they will conduct DNA and RNA sequencing for toxicity gene expression in the cyanobacteria.


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Casting a high tech sampling net to learn more about the Great Lakes ecosystem

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Researchers at GLERL are using a new tool, a MOCNESS, to study the Great Lakes.

In the Great Lakes, communities of plants and animals vary depending on where and when you look. They are dispersed up and down and all around in the water, making it tricky to collect them for research studies. To answer questions about these organisms and how they interact in the Great Lakes ecosystem, scientists from NOAA’s Great Lakes Environmental Research Laboratory (GLERL) and CIGLR (Cooperative Institute for Great Lakes Research) are using a new high tech sampling tool called a MOCNESS (Multiple Opening and Closing Net and Environmental Sensing System).

GLERL’s MOCNESS is the first of its kind to be used in a freshwater system. Scientists are hopeful that this technology will lead to new discoveries about the Great Lake ecosystem, such as where plankton (microscopic aquatic plants and animals) live and what causes their distributions to change over space and time. The MOCNESS will also help scientists learn more about predator-prey interactions that involve zooplankton (microscopic aquatic animals), phytoplankton (microscopic aquatic plants), and larval and juvenile fishes.

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A closer look the MOCNESS (Multiple Opening and Closing Net and Environmental Sensing System)

Keeping track of changes in plant and animal communities in the Great Lakes over time is important, especially with changes in climate, the onslaught of invasive species, and land use practices causing increased nutrient runoff into the lakes.

The MOCNESS is a big improvement over the traditional single mesh sized sample collection nets. The sampling system provided by this new tool has a series of nets of different mesh sizes to collect different sized organisms (see a few examples in the gallery below). The operator can remotely open and close these nets, much like an accordion. At the heart of the system is a set of sensors that measure depth, temperature, oxygen, light levels, and the green pigment found in algae, Chlorophyll-a. Because this data can be viewed in real time on the vessel, the operator can better determine what is going on below the water surface and choose where and when to sample different sized organisms.

Here are some of the key questions that the scientists hope to answer using this advanced technology:

  • How do plankton and larval fish respond to environmental gradients (water temperature, dissolved oxygen, UV radiation) over the course of the day, season, and across years?
  • What are the major causes for changing distributions of the animals across space and over time (long-term, seasonal, 24-hour cycle)?
  • How do these changes in affect reproduction, survival, and growth of individuals and their communities?

The MOCNESS has been tested in the waters of lakes Michigan and Huron for the past three years. The team, led by Dr. Ed Rutherford, is supporting GLERL’s long term study of the Great Lakes food webs and fisheries. “The MOCNESS will enhance the ability of our scientists to more effectively observe the dynamics of Great Lakes ecosystem over space and time—a critical research investment that will pay off for years to come,” says Rutherford.

This year, the team is actively processing samples that were collected in the spring and will continue to collect more samples through the fall. The MOCNESS will support ongoing ecological research on the Great Lakes and the results will be shared with others around the region who are working to make decisions about how to manage Great Lakes fisheries and other water resources.

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Leading the way toward solutions to flooding issues in Lake Champlain and Richelieu River System

A project update from GLERL Deputy Director, Jesse Feyen

GLERL has a long track record for modeling and predicting circulation and levels for our Great Lakes waters. Now we are working to apply this expertise in Lake Champlain, a large lake system that is shared with Canada. The lake lies along the New York/Vermont border and flows north into Quebec via the Richelieu River. In 2011, this lake-river system experienced significant precipitation and wind events that raised the levels of Lake Champlain to record levels and caused extensive flooding and damage around the lake and along the Richelieu River.

As a cross-border boundary water, management of the Lake Champlain/Richelieu River system is subject to the International Boundary Waters Treaty. In responding to a reference from the governments of the United States and Canada, the binational International Joint Commission (IJC) is conducting a study exploring the causes, impacts, risks, and solutions to flooding in the basin like during 2011.

The IJC has tapped GLERL to play a lead role in the study given our expertise in modeling the hydrology and hydrodynamics of the Great Lakes and experience working with Canadian partners. As a key expert in the IJC’s Upper Great Lakes Study and the Lake Ontario-St. Lawrence River Study, GLERL Director Deborah Lee was invited to serve as a U.S. member of the project’s Study Board, which provides the overall guidance and direction for the project. Deborah nominated Deputy Director Jesse Feyen to head up the U.S. portion of the study’s Hydraulics, Hydrology, and Mapping Technical Working Group, or HHM TWG.

A GLERL-led team of research partners is building solutions to these flooding issues in Lake Champlain and Richelieu River System. In addition to Lee and Feyen, team members include Integrated Physical and Ecological Modeling and Forecasting (IPEMF) Philip Chu, Drew Gronewold, and Eric Anderson; Cooperative Institute for Great Lakes Research (CIGLR) Dima Beletsky, Haoguo Hu, and Andy Xiao, with support from Lacey Mason; and the Northeast River Forecast Center’s Bill Saunders.

The two priorities of the study are to determine what flood mitigation measures can be implemented in the basin, and to create new flood forecast tools for the system. Current flood models operated by the National Weather Service (NWS) cannot account for the effects of winds and waves on Lake Champlain water levels, which can increase water level by several feet, significantly impacting flooding.

The modeling approach used in this study mirrors GLERL’s work in the Great Lakes. In Lake Champlain, a 3D FVCOM is being built to model water levels, temperature, and circulation; a WAVEWATCH III wave model will be coupled to FVCOM model to predict wave conditions; a WRF-Hydro (Weather Research and Forecasting) distributed hydrologic model will predict streamflow and runoff into the basin. This approach relies on models that are in use at NOAA and can readily be transferred to operations by the NWS and National Ocean Service, both of which have been participating in planning throughout the project.

While flooding issues in the Lake Champlain and Richelieu River system pose steep challenges on both sides of the border, GLERL brings the leadership, technical expertise as well as a “One NOAA” approach that are all essential for leveraging progress.


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Sounds of the storm and coral reef recovery following Hurricanes Irma and Maria in Puerto Rico

By Dr. Doran Mason (NOAA Great Lakes Environmental Research Laboratory) and Felix Martinez (National Centers for Coastal Ocean Science)

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University of Puerto Rico grad students servicing a hydrophone at the Weinberg site at La Parguera Natural Reserve on the southwest coast of Puerto Rico.  Photo Credit:  Rebecca Becicka, Ph.D. student at University of Puerto Rico, Mayagüez

Researchers at NOAA’s Great Lakes Environmental Research Laboratory (GLERL) are exploring the use of sound to monitor and assess the health of coastal ecosystems, most recently focusing on the soundscape created by Hurricanes Irma and Maria in Puerto Rico. In collaboration with the University of Puerto Rico at Mayagüez, Purdue University (a partner university in the Cooperative Institute for Great Lakes Research consortium), and the National Centers for Coastal Science (NCCOS), GLERL has launched a pilot study on developing the long-term use of soundscape. To implement this new approach to monitoring, hydrophones, an instrument in measuring sound, are used to track the response of ecosystems to natural (e.g., tropical storms) and human-induced (e.g., stressors such as excess nutrients, sedimentation, fishing pressure, climate change) disturbances.

In this pilot project, hydrophones have been in place for six months at three sites (see below for Google Earth Map of Magueyes Island, La Parguera, Puerto Rico) at La Parguera Natural Reserve on the southwest coast of Puerto Rico prior to and during the two category 4 hurricanes that pummeled the island. Miraculously, the recorders and data survived the storms and were recovered, providing us with a unique opportunity to listen to the hurricanes and to evaluate how quickly reefs recover from a natural disaster.  

What is a soundscape?  Soundscapes are created by the aggregation of sounds produced by living organisms (invertebrates, fish, marine mammals), non-biological natural sounds (waves, rain, movement of the earth), and sounds produced by humans (boats, coastal roads). Changes in the biological portion of soundscape can provide us with the quantitative data to assess the health of the ecosystem in response to natural and human-induced disturbance.  Thus, our overall goal is to develop quantitative indices of coastal ecosystem health, based on the soundscape to assess the state of the environment, and to understand and predict changes, with application towards ecosystem restoration and conservation efforts. The utility of this approach is the use of a low-cost, remote autonomous technology that holds potential in expanding NOAA’s long-term observational capacity to monitor and assess coastal habitats.

Why GLERL?  As part of a long history of monitoring and research in the Great Lakes, GLERL scientists have cultivated a unique expertise in the development of autonomous remote sensing technology. In the last two decades, Purdue University (a CIGLR partner) has been one of the leaders in the development of terrestrial soundscapes as a critical tool to monitor ecosystem change. More recently, interest has grown in expanding this approach into the aquatic realm.  Building on our relationship with Purdue, GLERL and partners are well positioned to advance use of soundscape ecology to meet NOAA’s mission to protect, restore, and manage the use of coastal and ocean resources. In addition to the pilot study, GLERL is partnering with NCCOS to reach out to other NOAA Line Office programs in efforts to formalize the use of soundscapes within NOAA as a scientific program.  For example, efforts are underway to plan an international workshop to establish the foundational principles and identify research and technology gaps for the use of soundscape ecology.

Why Puerto Rico? Original support for this pilot study came from a congressional allocation for enhancing relationships with the cooperative institutes for the benefit of coral reef restoration and conservation. Given the scientific knowledge accrued from NCCOS’ prior investments in La Parguera, GLERL and its NCCOS partner recognized that Puerto Rico would be a prime location to test and develop the use of soundscapes technology to track and quantify the health of coastal ecosystems.

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Google Earth Map of Magueyes Island, La Parguera, Puerto Rico showing coral reef locations where the hydrophones were deployed at different depths: Weinberg (shelf-edge) – 75′; Media Luna (mid-shelf) – 45′; Pelotas (inner-shelf) – 35′.  Provided by: Prof. Richard Appeldoorn, University of Puerto Rico, Mayagüez

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Colleagues from Purdue University and University of Puerto Rico deploy Media Luna reef site hydrophone for the first time.  Photo credit: Steve Ruberg, NOAA GLERL

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View of La Parguera from Media Luna reef site. Photo credit: Steve Ruberg, NOAA GLERL


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New algorithm to map Great Lakes ice cover

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GLERL researcher, George Leshkevich, drilling through the ice in Green Bay, Lake Michigan.

NOAA’s Great Lakes Environmental Research Laboratory (GLERL) is on the cutting edge of using satellite remote sensing to monitor different types of ice as well as the ice cover extent. To make this possible, an algorithm—a mathematical calculation developed at GLERL to retrieve major Great Lakes ice types from satellite synthetic aperture radar (SAR) data—has been transferred to NOAA’s National Environmental Satellite, Data, and Information Service (NESDIS) for evaluation for operational implementation.

Once operational, the algorithm for Great Lakes ice cover mapping holds multiple applications that will advance marine resource management, lake fisheries and ecosystem studies, Great Lakes climatology, and ice cover information distribution (winter navigation).  Anticipated users of the ice mapping results include the U.S. Coast Guard (USCG), U.S. National Ice Center (NIC), and the National Weather Service (NWS).

For satellite retrieval of key parameters (translation of satellite imagery into information on ice types and extent), it is necessary to develop algorithms specific to the Great Lakes owing to several factors:

  • Ocean algorithms often do not work well in time or space on the Great Lakes
  • Ocean algorithms often are not tuned to the parameters needed by Great Lakes stakeholders (e.g. ice types)
  • Vast difference exists in resolution and spatial coverage needs
  • Physical properties of freshwater differ from those of saltwater

The relatively high spatial and temporal resolution (level of detail) of SAR measurements, with its all-weather, day/night sensing capabilities, make it well-suited to map and monitor Great Lakes ice cover for operational activities. Using GLERL and Jet Propulsion Lab’s (JPL) measured library of calibrated polarimetric C-band SAR ice backscatter signatures, an algorithm was developed to classify and map major Great Lakes ice types using satellite C-band SAR data (see graphic below, Methodology for Great Lakes Ice Classification prototype).

ICECON (ice condition index) for the Great Lakes—a risk assessment tool recently developed for the Coast Guard—incorporates several physical factors including temperature, wind speed and direction, currents, ice type, ice thickness, and snow to determine 6 categories of ice severity for icebreaking operations and ship transit.  To support the ICECON ice severity index, the SAR ice type classification algorithm was modified to output ice types or groups of ice types, such as brash ice and pancake ice to adhere to and visualize the U.S. Coast Guards 6 ICECON categories. Ranges of ice thickness were assigned to each ice type category based on published freshwater ice nomenclature and extensive field data collection. GLERL plans to perform a demonstration/evaluation of the ICECON tool for the Coast Guard this winter.

Mapping and monitoring Great Lakes ice cover advances NOAA’s goals for a Weather-Ready Nation and Resilient Coastal Communities and Economies, and Safe Navigation. Results from this project, conducted in collaboration with Son V. Nghiem (NASA/Jet Propulsion Laboratory), will be made available to the user community via the NOAA Great Lakes CoastWatch website (https://coastwatch.glerl.noaa.gov).

 

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ICECON Scale

Measuring different ice types on Green Bay used to validate the ICECON (ice type classification) Scale in a RADARSAT-2 synthetic aperture radar (SAR) scene taken on February 26, 2017.

 


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Embracing Collaboration and Partnerships: A Way of Life at GLERL

The science community in the Great Lakes region holds a long history of partnership building, extending across jurisdictional, institutional, and disciplinary lines. These partnerships have been evolving in the region for decades as a means to leverage the intellectual capital and financial resources needed to address the environmental challenges (sediment and nutrient loading, toxic pollution, invasive species) threatening the integrity of the Great Lakes.  Agreements and programs established in the region—such as the Great Lakes Water Quality (1972), Great Lakes Regional Collaboration (2005), and Great Lakes Restoration Initiative (2010)—are celebrated for their unique partnerships of federal, state/provincial, and tribal and local governments.

GLERL has embraced the Great Lakes tradition of collaboration and partnership building in the development and implementation of its scientific research program since the laboratory’s inception in the mid-1970s.  As a primary organizational goal, GLERL envisions partnerships as a way to strengthen capacity in the conduct of its interdisciplinary research. One way that we accomplish this is by providing a hub for collaboration at GLERL’s Ann Arbor facility—such as space for meetings and workshops to help in the coordination of scientific research and policy—as well as at GLERL’s Lake Michigan Field Station in Muskegon where vessels and laboratory space are made available to support scientific investigations.

Also notable is GLERL’s historical partnership with the NOAA Cooperative Institutes (CIs). The CIs are academic research institutes, frequently co-located within NOAA research laboratories, to create a strong, long-term collaboration among government scientists in the laboratories and the associated academic institutions. Currently, there is great excitement at GLERL for the newly established Cooperative Institute for Great Lakes Research (CIGLR), formerly known as the Cooperative Institute for Limnology and Ecosystems Research. CIGLR, hosted by the University of Michigan’s School of Environment and Sustainability (SEAS), collaborates with nine university partners as part of the institute’s Regional Consortium. This collaborative arrangement expands the research capacity, intellectual expertise, and geographic reach of CIGLR and all its partners, while increasing GLERL’s ability to fulfill NOAA’s mission in the Great Lakes.

In keeping with the Great Lakes tradition of collaboration and partnership building, we are pleased to announce the creation GLERL’s new webpage, Collaborating with GLERL. Provided on the webpage is specific guidance on how to pursue collaboration and partnerships with GLERL in areas such as research partnerships, data access, event hosting, vessel operations, as well as internships and fellowships. Through this webpage, we hope to enable our partners to benefit from the valuable resources offered by NOAA GLERL.  We invite you to browse this webpage so you are fully aware of the opportunities that GLERL offers to help keep the Great Lakes great.

Visit the new webpage at https://www.glerl.noaa.gov/about/collaborating.html.